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DOI：10.31220/agriRxiv.2021.00039
声明：预印本系统所发表的论文仅用于最新科研成果的交流与共享，未经同行评议，因此不建议直接应用于指导生产实验。

Wheat genomics and breeding: bridging the gap.

  • Babar Hussain , 
  • Bala Anı Akpınar , 
  • Michaël Alaux , 
  • A. M. Algharib , 
  • Deepmala Sehgal , 
  • Zulfiqar Ali , 
  • R. Appels , 
  • G. I. Aradottir , 
  • Jacqueline Batley , 
  • Arnaud Bellec , 
  • Alison R. Bentley , 
  • H Busra Cagirici , 
  • L. Cattivelli , 
  • Frédéric Choulet , 
  • James Cockram , 
  • Flora Desiderio , 
  • Pierre Devaux , 
  • Münevver Doğramacı , 
  • Gabriel Dorado , 
  • Susanne Dreisigacker , 
  • Dave Edwards , 
  • K. El-Hassouni , 
  • Kellye Eversole , 
  • Tzion Fahima , 
  • Melania Figueroa , 
  • Sergio Gálvez , 
  • Kulvinder S. Gill , 
  • Liubov Govta , 
  • Alvina Gul , 
  • Goetz Hensel , 
  • Pilar Hernández , 
  • L. C. Herrera , 
  • Amir M. H. Ibrahim , 
  • Benjamin Kilian , 
  • Viktor Korzun , 
  • Tamar Krugman , 
  • Yinghui Li , 
  • Shuyu Liu , 
  • Amer F. Mahmoud , 
  • Alexey Morgounov , 
  • Tuğdem Muslu , 
  • Faiza Naseer , 
  • Frank Ordon , 
  • Etienne Paux , 
  • Dragan Perović , 
  • Gadi V. P. Reddy , 
  • Jochen C. Reif , 
  • Matthew Reynolds , 
  • Rajib Roychowdhury , 
  • Jackie C. Rudd , 
  • Taner Z. Sen , 
  • Sivakumar Sukumaran , 
  • Vijay K. Tiwari , 
  • Naimat Ullah , 
  • Turgay Ünver , 
  • Selami Yazar , 
  • Hikmet Buda

  • 1. Department of Biological Sciences Middle East Technical University Ankara Turkey; 

  • 2. Montana BioAgriculture Inc. Missoula Montana USA; 

  • 3. Université Paris-Saclay INRAE URGI 78026 Versailles France; 

  • 4. Al-Azhar University Cairo Egypt; 

  • 5. International Maize and Wheat Improvement Center (CIMMYT) Texcoco Mexico; 

  • 6. Institute of Plant Breeding and Biotechnology MNS University of Agriculture Multan Pakistan; 

  • 7. La Trobe University Melbourne Victoria Australia; 

  • 8. Department of Pathology NIAB 93 Lawrence Weaver Road Cambridge CB3 0LE UK; 

  • 9. University of Western Australia Australia; 

  • 10. International Maize and Wheat Improvement Center (CIMMYT) Texcoco Mexico; 

  • 11. USDA Agricultural Research Service Crop Improvement and Genetics Research Albany California USA; 

  • 12. French National Research Institute for Agriculture Food and the Environment INRAE GDEC 63000 Clermont-Ferrand France; 

  • 13. The John Bingham Laboratory NIAB 93 Lawrence Weaver Road Cambridge CB3 0LE UK; 

  • 14. USDA Agricultural Research Service Edward T. Schafer Agricultural Research Center Fargo North Dakota USA; 

  • 15. Departamento de Bioquímica y Biología Molecular Campus Rabanales C6-1-E17 Campus de Excelencia Internacional Agroalimentario (ceiA3) Universidad de Córdoba 14071 Córdoba Spain; 

  • 16. International Maize and Wheat Improvement Center (CIMMYT) Texcoco Mexico; 

  • 17. Department of Pathology NIAB 93 Lawrence Weaver Road Cambridge CB3 0LE UK; 

  • 18. State Plant Breeding Institute The University of Hohenheim Germany; 

  • 19. Institute of Evolution and Department of Environmental and Evolutionary Biology University of Haifa 199 Abba Khoushy Avenue Haifa 3498838 Israel; 

  • 20. Commonwealth Scientific and Industrial Research Organization Agriculture and Food Canberra Australia; 

  • 21. Department of Languages and Computer Science ETSI Informática Campus de Teatinos Universidad de Málaga Andalucía Tech 29071 Málaga Spain; 

  • 22. Department of Crop Science Washington State University Pullman Washington USA; 

  • 23. Institute of Evolution and Department of Environmental and Evolutionary Biology University of Haifa 199 Abba Khoushy Avenue Haifa 3498838 Israel; 

  • 24. Atta-ur-Rahman School of Applied Biosciences National University of Sciences and Technology Islamabad Pakistan; 

  • 25. Center of Plant Genome Engineering Heinrich-Heine-Universit?t Düsseldorf Germany; 

  • 26.  Division of Molecular Biology Centre of Region Hana' for Biotechnological and Agriculture Research Czech Advanced Technology and Research Institute Palacky' University Olomouc Czech Republic; 

  • 27. Institute for Sustainable Agriculture (IAS-CSIC) Consejo Superior de Investigaciones Científicas (CSIC) Alameda del Obispo s/n 14004 Córdoba Spain; 

  • 28. International Maize and Wheat Improvement Center (CIMMYT) Texcoco Mexico; 

  • 29. Crop and Soil Science Texas A& 

  • 30. M University College Station Texas USA; 

  • 31. KWS SAAT SE & 

  • 32.  Co. KGaA Grimsehlstr. 31 37555 Einbeck Germany; 

  • 33.  Laboratory of Plant Infectious Diseases FRC Kazan Scientific Center of RAS Ul. Lobachevskogo 2/31 Kazan 420111 Tatarstan Russia; 

  • 34. Institute of Evolution and Department of Environmental and Evolutionary Biology University of Haifa 199 Abba Khoushy Avenue Haifa 3498838 Israel; 

  • 35. Institute of Evolution and Department of Environmental and Evolutionary Biology University of Haifa 199 Abba Khoushy Avenue Haifa 3498838 Israel; 

  • 36. Crop and Soil Science Texas A& 

  • 37. M University College Station Texas USA; 

  • 38. Department of Plant Pathology Faculty of Agriculture Assiut University 71526 Assiut Egypt; 

  • 39. Molecular Biology Genetics and Bioengineering Sabanci University Istanbul Turkey; 

  • 40. Atta-ur-Rahman School of Applied Biosciences National University of Sciences and Technology Islamabad Pakistan; 

  • 41. Institute for Resistance Research and Stress Tolerance Julius Kühn Institute Erwin-Baur-Str. Quedlinburg Germany; 

  • 42. French National Research Institute for Agriculture Food and the Environment INRAE GDEC 63000 Clermont-Ferrand France; 

  • 43. Institute for Resistance Research and Stress Tolerance Julius Kühn Institute Erwin-Baur-Str. Quedlinburg Germany; 

  • 44. USDA-Agricultural Research Service Southern Insect Management Research Unit Stoneville Mississippi USA; 

  • 45. Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben Germany; 

  • 46. International Maize and Wheat Improvement Center (CIMMYT) Texcoco Mexico; 

  • 47. Institute of Evolution and Department of Environmental and Evolutionary Biology University of Haifa 199 Abba Khoushy Avenue Haifa 3498838 Israel; 

  • 48. Crop and Soil Science Texas A& 

  • 49. M University College Station Texas USA; 

  • 50. USDA Agricultural Research Service Crop Improvement and Genetics Research Albany California USA; 

  • 51. International Maize and Wheat Improvement Center (CIMMYT) Texcoco Mexico; 

  • 52. University of Maryland Maryland USA; 

  • 53. Institute of Biological Sciences (IBS) Gomal University D. I. Khan Pakistan; 

  • 54. Ministry of Agriculture General Directorate of Research Ankara Turkey; 

  • 55. Montana BioAgriculture Inc. Missoula Montana US; 

  •  

    Abstract: Abstract Recent technological advances in next-generation sequencing (NGS) technologies have dramatically reduced the cost of DNA sequencing, allowing species with large and complex genomes to be sequenced. Although bread wheat ( Triticum aestivum L.) is one of the world's most important food crops, until very recently efficient exploitation of molecular marker-assisted breeding approaches has lagged behind that achieved in other crop species due to its large polyploid genome. However, an international public-private effort spanning nine years reported over 65% draft genome of bread wheat in 2014, and finally, after more than a decade culminated in the release of a gold-standard, fully annotated reference wheat genome assembly in 2017. Shortly thereafter, in 2020, the genome of assemblies of additional fifteen global wheat accessions were released. Wheat has now entered into the pan-genomic era where basic resources can be efficiently exploited. Wheat genotyping with a few hundred markers has been replaced by genotyping arrays capable of genotyping hundreds of wheat lines using thousands of markers, providing fast, relatively inexpensive, and reliable data for exploitation in wheat breeding. These advances have opened up a new horizon for marker-assisted selection (MAS) and genomic selection (GS) in wheat. Herein, we review the advances and perspectives in wheat genetics and genomics, with a focus on key traits including grain yield, yield-related traits, end-use quality and resistance to biotic and abiotic stresses. We also enlisted several reported candidate and cloned candidate genes responsible for the aforesaid traits of interest. Furthermore, we report on the improvement in the aforementioned quantitative traits through the use of (i) clustered regularly interspaced short palindromic repeats/CRISPR-associated protein 9 (CRISPR/Cas9) mediated gene-editing, (ii) positional cloning methods, and of genomic selection. Finally, we make recommendations on the utilization of genomics for the next-generation wheat breeding and provide a practical example of using the latest, in silico bioinformatics tools that were based on the wheat reference genome sequence.

    Key words: wheat; advances; traits; reported; bread wheat; marker

    提交时间：2021-01-01

    版权声明：作者本人独立拥有该论文的版权，预印本系统仅拥有论文的永久保存权利。任何人未经允许不得重复使用。

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  • 序号 提交日期 编号 操作
    1 2021-01-01

    10.31220/agriRxiv.2021.00039V1

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引用格式

Babar Hussain, Bala Anı Akpınar, Michaël Alaux, A. M. Algharib, Deepmala Sehgal, Zulfiqar Ali, R. Appels, G. I. Aradottir, Jacqueline Batley, Arnaud Bellec, Alison R. Bentley, H Busra Cagirici, L. Cattivelli, Frédéric Choulet, James Cockram, Flora Desiderio, Pierre Devaux, Münevver Doğramacı, Gabriel Dorado, Susanne Dreisigacker, Dave Edwards, K. El-Hassouni, Kellye Eversole, Tzion Fahima, Melania Figueroa, Sergio Gálvez, Kulvinder S. Gill, Liubov Govta, Alvina Gul, Goetz Hensel, Pilar Hernández, L. C. Herrera, Amir M. H. Ibrahim, Benjamin Kilian, Viktor Korzun, Tamar Krugman, Yinghui Li, Shuyu Liu, Amer F. Mahmoud, Alexey Morgounov, Tuğdem Muslu, Faiza Naseer, Frank Ordon, Etienne Paux, Dragan Perović, Gadi V. P. Reddy, Jochen C. Reif, Matthew Reynolds, Rajib Roychowdhury, Jackie C. Rudd, Taner Z. Sen, Sivakumar Sukumaran, Vijay K. Tiwari, Naimat Ullah, Turgay Ünver, Selami Yazar, Hikmet Buda. Wheat genomics and breeding: bridging the gap.. 2021. agriXiv.2021.00039

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